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A Data Carpentry Workshop

IFOM - Istituto FIRC di Oncologia Molecolare

September 27-28, 2016

9.00am - 5.00pm

Instructors: Martin Callaghan, Elena Sügis, Dymtro Fishman

Helpers: Endre Sebestyén, Mauro Donadello

General Information

Data Carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data.

We will cover Data organization in spreadsheets and OpenRefine, Introduction to R, Data analysis and visualization in R and Analysing gene expression data. Participants should bring their laptops and plan to participate actively. By the end of the workshop learners should be able to more effectively manage and analyze data and be able to apply the tools and approaches directly to their ongoing research.

Who: The course is aimed at graduate students and postdoctoral researchers based at IFOM in Milan

Where: IFOM-IEO Campus, Via Adamello 16, 20139 Milan Italy. Get directions with OpenStreetMap or Google Maps.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating sytem (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed in the setup instructions). They are also required to abide by Data Carpentry's Code of Conduct.

Contact: Please mail endre.sebestyen@ifom.eu for more information.


Preliminary Schedule

Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey

Day 1

Morning Data organization in spreadsheets and OpenRefine
Afternoon Introduction to R

Day 2

Morning Data analysis and visualization in R
Afternoon Analysing gene expression data

Etherpad: http://pad.software-carpentry.org/2016-09-27-milan.
We will use this Etherpad for chatting, taking notes, and sharing URLs and bits of code.


Setup

To participate in a Data Carpentry workshop, you will need working copies of the described software. Please make sure to install everything (or at least to download the installers) before the start of your workshop. Participants should bring and use their own laptops to insure the proper setup of tools for an efficient workflow once you leave the workshop.

Please follow these Setup Instructions.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.